PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

73105

Common Name

SELMODRAFT_73104, SELMODRAFT_73105

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Nin-like

Protein Properties

Length: 53aa MW: 6247.47 Da PI: 12.1021

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73105	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.6	2.1e-27	5	53	2	50
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 + +++++dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRk++ 73105 5 TGKLKMSDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKVR 53 5689*******************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	1	53	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	8	53	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 53 aa Download sequence Send to blast
QRERTGKLKM SDLAQHFHLP INAAAKELGI CPTVLKKICR RNGMRRWPHR KVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002983687.2	5e-32	protein NLP1
Refseq	XP_024358580.1	1e-31	uncharacterized protein LOC112273714 isoform X1
TrEMBL	D8RM22	3e-31	D8RM22_SELML; Uncharacterized protein (Fragment)
STRING	EFJ05382	4e-32	(Selaginella moellendorffii)
STRING	EFJ26817	4e-32	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	73105
Entrez Gene	9650160 \| 9663395

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]