PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73198
Common NameSELMODRAFT_73198, SELMODRAFT_73199
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bZIP
Protein Properties Length: 56aa    MW: 6516.31 Da    PI: 10.0128
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73198genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.39.5e-15152152
            XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
            ++e+kr  r+++NRe+A+ sRqRKka+++ Lee+v +L a   +L ++++ +
   73198  1 DEEVKRKARLMRNRESAQLSRQRKKAYVDDLEERVRTLNATVAELNNTVSLI 52
            5799************************************999998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-5156IPR004827Basic-leucine zipper domain
PfamPF001708.7E-13252IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.956356IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-12554No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-16556No hitNo description
CDDcd147045.60E-12656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
DEEVKRKARL MRNRESAQLS RQRKKAYVDD LEERVRTLNA TVAELNNTVS LISAEN
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the DNA sequence 5'-TGACG-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024522084.12e-29bZIP transcription factor 60-like
RefseqXP_024540899.12e-29bZIP transcription factor 60-like
SwissprotP142336e-16TGA1B_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)
TrEMBLD8S9J85e-30D8S9J8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ062849e-31(Selaginella moellendorffii)
STRINGEFJ189729e-31(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21711628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.13e-17bZIP family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]