PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

73220

Common Name

SELMODRAFT_73219, SELMODRAFT_73220, WRKY_21, WRKY_31

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WRKY

Protein Properties

Length: 59aa MW: 6787.94 Da PI: 11.0592

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73220	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62	1e-19	25	59	3	36
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EE CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkk 36 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k 73220 25 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARK 59 99*********************9988**98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.8E-9	2	21	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.4E-21	12	59	IPR003657	WRKY domain
PROSITE profile	PS50811	20.759	18	59	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-17	21	59	IPR003657	WRKY domain
SMART	SM00774	1.9E-8	23	59	IPR003657	WRKY domain
Pfam	PF03106	1.8E-16	25	59	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
NRKLRVKRTI TVPAISNKLA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964315.2	2e-34	probable WRKY transcription factor 39
Swissprot	Q9SR07	9e-33	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	D8QYP0	3e-35	D8QYP0_SELML; Uncharacterized protein WRKY_21 (Fragment)
STRING	EFJ31066	5e-36	(Selaginella moellendorffii)
STRING	EFJ34648	5e-36	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	4e-35	WRKY DNA-binding protein 39

Link Out ? help Back to Top
Phytozome	73220
Entrez Gene	9633154 \| 9655533

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]