PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

73225

Common Name

SELMODRAFT_73225, WRKY_10

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WRKY

Protein Properties

Length: 51aa MW: 5707.66 Da PI: 10.7842

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73225	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	48.5	1.8e-15	22	51	8	36
EEEEEE--TT-SS-EEEEEE-ST.T---EE CS WRKY 8 rKYGqKevkgsefprsYYrCtsa.gCpvkk 36 rKYGqK++kgs++pr+YY+C+s gCp++k 73225 22 RKYGQKPIKGSPHPRGYYKCSSLrGCPARK 51 9******************998**98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-15	11	51	IPR003657	WRKY domain
SMART	SM00774	2.8E-5	18	51	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-12	22	51	IPR003657	WRKY domain
Pfam	PF03106	5.3E-12	22	51	IPR003657	WRKY domain
PROSITE profile	PS50811	17.075	22	51	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
VKRVINVPAV SNKIADIPQD ERKYGQKPIK GSPHPRGYYK CSSLRGCPAR K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002970246.1	6e-26	probable WRKY transcription factor 11
Refseq	XP_002978404.1	6e-26	probable WRKY transcription factor 11
Refseq	XP_024531200.1	6e-26	probable WRKY transcription factor 11
Refseq	XP_024539193.1	6e-26	probable WRKY transcription factor 11
Swissprot	Q9SR07	9e-24	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	D8RGJ2	2e-28	D8RGJ2_SELML; Uncharacterized protein WRKY_10 (Fragment)
STRING	EFJ28608	3e-29	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1817	15	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	4e-26	WRKY DNA-binding protein 39

Link Out ? help Back to Top
Phytozome	73225
Entrez Gene	9632180

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]