PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73264
Common NameMICPUN_73264
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 96aa    MW: 10817.3 Da    PI: 11.173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73264genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-14142647
                     HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47
                     ++Ed ll + +++lGg+ +W++Ia+ ++ gR+ k+c++rw + 
            73264  1 PQEDALLREQIQKLGGPgNWTAIAEALP-GRSSKSCRLRWCNQ 42
                     68**************************.***********985 PP
2Myb_DNA-binding551.8e-174993147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++T++Ed  ++ a++ +G++ W+ I+r ++ gRt++q+k+r+++ 
            73264 49 RGPFTEDEDRAILAAHAIHGNK-WAVISRSIP-GRTDNQVKNRFNST 93
                     89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.309143IPR017930Myb domain
SMARTSM007172.6E-6145IPR001005SANT/Myb domain
PfamPF002491.5E-12142IPR001005SANT/Myb domain
CDDcd001671.73E-10141No hitNo description
Gene3DG3DSA:1.10.10.605.3E-22150IPR009057Homeodomain-like
SuperFamilySSF466891.29E-262395IPR009057Homeodomain-like
PROSITE profilePS5129424.9684496IPR017930Myb domain
SMARTSM007172.5E-164896IPR001005SANT/Myb domain
PfamPF002491.5E-154993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-235196IPR009057Homeodomain-like
CDDcd001671.54E-125194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
PQEDALLREQ IQKLGGPGNW TAIAEALPGR SSKSCRLRWC NQLNPMVKRG PFTEDEDRAI  60
LAAHAIHGNK WAVISRSIPG RTDNQVKNRF NSTLRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-2929633126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013264e-67CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002502026.13e-66predicted protein, partial
SwissprotQ425756e-37MYB1_ARATH; Transcription factor MYB1
TrEMBLC1E5N26e-65C1E5N2_MICCC; Uncharacterized protein (Fragment)
STRINGXP_002502026.11e-65(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-40myb domain protein 109
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]