PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

73449

Common Name

MICPUN_73449

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 119aa MW: 13836.2 Da PI: 4.6625

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73449	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	84	103	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cg+ F + + + H+r 73449 84 QCVFCGRKFGSLEGVRGHMR 103 7******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.53E-5	17	84	No hit	No description
Pfam	PF12756	2.3E-20	35	113	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
DGEEALENDS EHDSEWETDD DDENAPFEPR PCESLFDGAE LDTVHDNVEY MRRTHGFVFP 60 YRGNLKDPEG IIGYLQRKIY RGRQCVFCGR KFGSLEGVRG HMRDKGHAKI RFEPPEVFK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001332	0.0	CP001332.1 Micromonas sp. RCC299 chromosome 14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505877.1	3e-84	predicted protein, partial
TrEMBL	C1EGJ5	6e-83	C1EGJ5_MICCC; Uncharacterized protein (Fragment)
STRING	XP_002505877.1	1e-83	(Micromonas sp. RCC299)

Link Out ? help Back to Top
Phytozome	73449
Entrez Gene	8249011

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]