PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

73941

Common Name

SELMODRAFT_73941

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 398aa MW: 44026.4 Da PI: 9.3501

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73941	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.2	2.2e-18	82	163	2	77
trihelix 2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 Wt qe++ Li+a++ ++er +g k+++ +W++v ++++++g++rs++qC++kw+nl ++ykk++e e+k ++sss 73941 82 WTLQETMILIQAKKMDDERRLKGgdkekgKSAEFRWKWVENFCWRKGCQRSQNQCNDKWDNLLRDYKKVREFESKVMAGSSS 163 ***********9777777653233333799***************************************998776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.445	74	144	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	75	147	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.77E-5	77	145	IPR009057	Homeodomain-like
Pfam	PF13837	3.5E-11	81	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MADQGTASAI VPLVVAAASS SSAGLTSPAS GAAAAATPPP PPTLEIEQQQ PQQQQQQQQQ 60 LEALDSSRGG GGGSREYRKG NWTLQETMIL IQAKKMDDER RLKGGDKEKG KSAEFRWKWV 120 ENFCWRKGCQ RSQNQCNDKW DNLLRDYKKV REFESKVMAG SSSSAAAAAA AGAAPVVNQK 180 SYWQLEKHER KERGLPSNMI IQVYEALHEV VDKRPRPLLQ QQAQAQVQVQ QQVQQPFPQQ 240 IPLHPQQQQQ QIHQLHQHQQ HHHQQQHIFS QVHLPGPSSA AAGVPLQQAT EVSKSTESEG 300 SEMERSPSGK RRKVSREQGL APTVSKSAYE LSQTLLACEE KKDKRHRDLL GLEERKLGLE 360 EAKTEISRQG MEGLIAAVNN LANAILTLVS DRQQPPG*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MADQGTASAI VPLVVAAASS SSAGLTSPAS GAAAAATPPP PPTLEIEQQQ PQQQQQQQQQ  60
LEALDSSRGG GGGSREYRKG NWTLQETMIL IQAKKMDDER RLKGGDKEKG KSAEFRWKWV  120
ENFCWRKGCQ RSQNQCNDKW DNLLRDYKKV REFESKVMAG SSSSAAAAAA AGAAPVVNQK  180
SYWQLEKHER KERGLPSNMI IQVYEALHEV VDKRPRPLLQ QQAQAQVQVQ QQVQQPFPQQ  240
IPLHPQQQQQ QIHQLHQHQQ HHHQQQHIFS QVHLPGPSSA AAGVPLQQAT EVSKSTESEG  300
SEMERSPSGK RRKVSREQGL APTVSKSAYE LSQTLLACEE KKDKRHRDLL GLEERKLGLE  360
EAKTEISRQG MEGLIAAVNN LANAILTLVS DRQQPPG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	216	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960186.1	0.0	SUN domain-containing protein 2
TrEMBL	D8QQ41	0.0	D8QQ41_SELML; Uncharacterized protein
STRING	EFJ37725	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-48	Trihelix family protein

Link Out ? help Back to Top
Phytozome	73941
Entrez Gene	9633588

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]