PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

74001

Common Name

SELMODRAFT_74001

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 146aa MW: 16763.3 Da PI: 9.1884

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74001	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.5	4.7e-48	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 pGfrF+Pt+ elv +yL+k +e+k+l + e i+ +d++k++Pw+Lp ++ +++ewyfF++r++ky++g+r+nr+t sgyWkatg+dk+v++k +++ + 74001 4 LPGFRFSPTEYELVGYYLRKLAEEKELGV-ELIAVIDLVKHDPWELPGlaisLAHMGDTEWYFFVPRQHKYPNGSRPNRVTPSGYWKATGTDKPVMDKeNNTSI 106 59**********************999.89***********445654455899***********************************967778 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 gl+ktLvfykg+apkgekt W+m eyrl 74001 107 GLRKTLVFYKGKAPKGEKTPWIMSEYRL 134 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-51	3	140	IPR003441	NAC domain
PROSITE profile	PS51005	48.764	3	145	IPR003441	NAC domain
Pfam	PF02365	9.9E-25	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MEKLPGFRFS PTEYELVGYY LRKLAEEKEL GVELIAVIDL VKHDPWELPG LAISLAHMGD 60 TEWYFFVPRQ HKYPNGSRPN RVTPSGYWKA TGTDKPVMDK ENNTSIGLRK TLVFYKGKAP 120 KGEKTPWIMS EYRLPDEQNA QFKVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-46	5	144	19	154	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-46	5	144	19	154	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-46	5	144	19	154	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-46	5	144	19	154	NO APICAL MERISTEM PROTEIN
3swm_A	8e-46	5	144	22	157	NAC domain-containing protein 19
3swm_B	8e-46	5	144	22	157	NAC domain-containing protein 19
3swm_C	8e-46	5	144	22	157	NAC domain-containing protein 19
3swm_D	8e-46	5	144	22	157	NAC domain-containing protein 19
3swp_A	8e-46	5	144	22	157	NAC domain-containing protein 19
3swp_B	8e-46	5	144	22	157	NAC domain-containing protein 19
3swp_C	8e-46	5	144	22	157	NAC domain-containing protein 19
3swp_D	8e-46	5	144	22	157	NAC domain-containing protein 19
4dul_A	9e-46	5	144	19	154	NAC domain-containing protein 19
4dul_B	9e-46	5	144	19	154	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960840.2	1e-103	NAC domain-containing protein 35
Swissprot	Q9ZVP8	7e-52	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	D8QQ10	1e-103	D8QQ10_SELML; Uncharacterized protein
STRING	EFJ38379	1e-104	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	2e-54	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	74001
Entrez Gene	9663151

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]