PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

74029

Common Name

MICPUN_74029

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 71aa MW: 7723.1 Da PI: 9.2094

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74029	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	49.3	1.1e-15	1	71	24	94
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 arikk+++ade+v +i+ +Pvl++ka e+f++el + a +t+ + a++ ++fdfl d 74029 1 ARIKKLMQADEEVGKIAQATPVLMAKALEMFMVELMKSTTDIASAHGAKTVSAGHLRASIMGNEKFDFLKD 71 7********************************7666667788899*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-21	1	71	IPR009072	Histone-fold
Pfam	PF00808	1.7E-14	1	58	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.75E-18	1	71	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
ARIKKLMQAD EEVGKIAQAT PVLMAKALEM FMVELMKSTT DIASAHGAKT VSAGHLRASI 60 MGNEKFDFLK D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-15	1	60	15	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	1e-72	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500616.1	1e-44	predicted protein, partial
Swissprot	Q6C6M5	1e-22	DPB3_YARLI; DNA polymerase epsilon subunit C
TrEMBL	C1E288	2e-43	C1E288_MICCC; Uncharacterized protein (Fragment)
STRING	XP_002500616.1	4e-44	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3343	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-20	NF-YC family protein

Link Out ? help Back to Top
Phytozome	74029
Entrez Gene	8242231

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]