PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

74309

Common Name

SELMODRAFT_74309

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 236aa MW: 26557 Da PI: 8.6631

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74309	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	86	108	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+ +F++k +L Hi+ H 74309 86 VCSVCSSCFPTKRLLSLHISEtH 108 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	5.7	58	83	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	60	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.88	85	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	87	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.7	123	148	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	125	148	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGAFPAWSAC RRRFSPDDAF FNAGNVEREL QAKQVSLNIS EEERAYIGRI EDEDCWLVNC 60 SIAGCGAQLR GVEELENHHL IRHTAVCSVC SSCFPTKRLL SLHISETHDS FFKAKVARNH 120 PMYECLVEGC PGVFFSDKSR KQHLVDKHKF PSSFHFHKST KNHPSQKQRQ RFKAKSYMDS 180 APKPEEAAMS VDVDELSSAI SKLTTAAESD HVPQSISFGR KRGGLVTRHS RHPRN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960580.1	1e-176	zinc finger protein 511 isoform X2
TrEMBL	D8QNK5	1e-175	D8QNK5_SELML; Uncharacterized protein
STRING	EFJ38119	1e-176	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7538	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	4e-68	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	74309
Entrez Gene	9632747

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]