PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

74605

Common Name

SELMODRAFT_450985

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 257aa MW: 29160.2 Da PI: 7.6992

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74605	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	159.3	3.3e-49	33	254	98	318
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 Nq Il+a g++r+Hi+D+++ G+Q lq+La+ p+gpp lRiTg++sp + + + +g L+++A+++g+pf+f++ ++k++e+++ +L ++ +E+ 74605 33 PNQVILNACRGHQRIHIVDYGACFGFQ----LQELANTPGGPPYLRITGIDSPLP-GGGSASDVGCMLREYAQSIGLPFKFRA-MSKKWENIDAATLLLSDDEV 130 6************************....9****************765.5677899****************.8*************** PP GRAS 202 la...Vnlvlql....hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 la Vnl+l+ +lldes es+r+ L+ v+sl+P+v+v ++a++n + F++ fleal +++ lf++++ +es+er+ +E+e g+eivn+v 74605 131 LArnqVNLMLNStlwrTNLLDESILAESPRKVWLNWVWSLNPRVFVQGMNNASYNVPFFMTWFLEALTHFTLLFEAIDCCSQPESKERHLLEQEKNGWEIVNIV 234 99555555554422224677********************************************************9******************* PP GRAS 299 acegaerrerhetlekWrer 318 ace e++er et ++W++r 74605 235 ACERLEQVERAETHKQWHSR 254 ***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.241	1	256	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-46	33	254	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MASSRRCVTR GQPRERCSSR SSTSWNGARS CLPNQVILNA CRGHQRIHIV DYGACFGFQL 60 QELANTPGGP PYLRITGIDS PLPGGGSASD VGCMLREYAQ SIGLPFKFRA MSKKWENIDA 120 ATLLLSDDEV LARNQVNLML NSTLWRTNLL DESILAESPR KVWLNWVWSL NPRVFVQGMN 180 NASYNVPFFM TWFLEALTHF TLLFEAIDCC SQPESKERHL LEQEKNGWEI VNIVACERLE 240 QVERAETHKQ WHSRTQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-21	34	253	98	316	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024532571.1	1e-144	scarecrow-like protein 9
TrEMBL	D8QPR2	0.0	D8QPR2_SELML; GRAS family protein
STRING	EFJ38323	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	3e-49	GRAS family protein

Link Out ? help Back to Top
Phytozome	74605
Entrez Gene	9663107

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]