PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

74715

Common Name

MICPUN_74715

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 58aa MW: 6634.66 Da PI: 9.0368

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74715	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.6e-06	1	21	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F k L +H +tH 74715 1 CETCGKTFAEKRFLLKHAKTH 21 ********************9 PP
2	zf-C2H2	14.3	0.00012	27	51	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C C + F ++s LkrH tH 74715 27 YTCAfeGCAMGFLDSSKLKRHWLTH 51 99*********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	14	1	21	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.74E-11	1	51	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-8	1	26	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	13.671	1	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1	21	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.3	27	51	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-11	27	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.349	27	53	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	51	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 58 aa Download sequence Send to blast
CETCGKTFAE KRFLLKHAKT HDTDRPYTCA FEGCAMGFLD SSKLKRHWLT HPGVGHLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	2e-92	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501692.1	1e-36	predicted protein, partial
TrEMBL	C1E3J6	2e-35	C1E3J6_MICCC; Uncharacterized protein (Fragment)
STRING	XP_002501692.1	4e-36	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15267	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-11	C2H2 family protein

Link Out ? help Back to Top
Phytozome	74715
Entrez Gene	8242590

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]