PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

74761

Common Name

MICPUN_74761

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 69aa MW: 8022 Da PI: 10.7144

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74761	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.6e-12	1	57	7	63
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rrk+ NRe+Arrs qRKk+e e L k++eL e +L+ ele+ +k+v++l e+ 74761 1 QRRKEANRESARRSKQRKKEESELLSSKAQELVRESATLRAELEKVQKHVDNLYEEN 57 79**************************************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.0E-6	1	59	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-9	1	54	No hit	No description
Pfam	PF00170	2.4E-11	1	57	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-9	1	53	No hit	No description
PROSITE profile	PS50217	11.553	1	60	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
QRRKEANRES ARRSKQRKKE ESELLSSKAQ ELVRESATLR AELEKVQKHV DNLYEENTAL 60 RKQISKAGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	17	RRSKQRK
2	11	19	RRSKQRKKE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001575	1e-112	CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002508190.1	5e-40	predicted protein, partial
TrEMBL	C1FFX4	1e-38	C1FFX4_MICCC; Uncharacterized protein (Fragment)
STRING	XP_002508190.1	2e-39	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9223	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	5e-14	basic region/leucine zipper transcription factor 16

Link Out ? help Back to Top
Phytozome	74761
Entrez Gene	8245535

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]