PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 75886
Common NameSELMODRAFT_75886, SELMODRAFT_86553
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 214aa    MW: 22500.4 Da    PI: 8.2854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
75886genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-061336225
             -S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
             kt++C  f+ t  C+yG+ C+F H
    75886 13 KTKPCTKFFSTSGCPYGEGCHFLH 36
             9*********************** PP
2zf-CCCH27.74.6e-09180204126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt+lC +++  GtC + +rC+FaHg
    75886 180 FKTKLCENYSS-GTCTFAERCHFAHG 204
              69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4651139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-71137IPR000571Zinc finger, CCCH-type
SMARTSM003560.631138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-91336IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.16E-1687167IPR004088K Homology domain, type 1
SMARTSM003227.9E-1393163IPR004087K Homology domain
PROSITE profilePS5008415.28494158IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.2E-1695163IPR004088K Homology domain, type 1
CDDcd001059.99E-1696158No hitNo description
PfamPF000131.6E-1297159IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.7E-15177210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.02E-8178210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915179206IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5179205IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6180204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
RDLTQQTSAL GSKTKPCTKF FSTSGCPYGE GCHFLHYVPG GINSLQNGAT AGIGGAAALI  60
NGTTVFSSNP VATSVYYGEP TPPGVPAATT FGSISVTRMS IEAAYAGAII GKAGANVKQI  120
SKVTGCKVSI RDHETDPNMR NVEMEGSLEQ IESASEMVRQ LLQTREVAPP RGPALGSHNF  180
KTKLCENYSS GTCTFAERCH FAHGTQELRP IIR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024527485.11e-115zinc finger CCCH domain-containing protein 14
RefseqXP_024536114.11e-115zinc finger CCCH domain-containing protein 14
SwissprotQ9C7C32e-58C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLD8QND81e-156D8QND8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ314041e-157(Selaginella moellendorffii)
STRINGEFJ387441e-157(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-50C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]