PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 75978
Common NameSELMODRAFT_75978
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 147aa    MW: 17258.8 Da    PI: 10.4775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
75978genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.21.3e-204692148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
            75978 46 KGPWTKEEDDRIIELVNKYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 92
                     79******************************.*************97 PP
2Myb_DNA-binding60.82.9e-1998142147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++WT++Ed+ l+ a++++G++ W+ Ia+ ++ gRt++++k++w++ 
            75978  98 RDAWTQQEDLALIYAHQRYGNK-WAEIAKFLP-GRTDNSIKNHWNST 142
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.0542140IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.2E-112350IPR009057Homeodomain-like
SuperFamilySSF466894.38E-62350IPR009057Homeodomain-like
PROSITE profilePS5129432.5944196IPR017930Myb domain
SuperFamilySSF466895.19E-3443139IPR009057Homeodomain-like
SMARTSM007171.3E-184594IPR001005SANT/Myb domain
PfamPF002491.2E-194692IPR001005SANT/Myb domain
CDDcd001671.28E-154892No hitNo description
Gene3DG3DSA:1.10.10.601.7E-285199IPR009057Homeodomain-like
SMARTSM007171.5E-1797145IPR001005SANT/Myb domain
PROSITE profilePS5129422.74197147IPR017930Myb domain
PfamPF002495.5E-1798141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-25100146IPR009057Homeodomain-like
CDDcd001672.03E-12100140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLCRSDAFNS VLNGVFGLFP AAFFKNRTDV QCLHRWQKVL NPDLVKGPWT KEEDDRIIEL  60
VNKYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPNIKRDA WTQQEDLALI YAHQRYGNKW  120
AEIAKFLPGR TDNSIKNHWN STMKKKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-692114733159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-692114733159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531823.12e-90transcription factor MYB3R-5 isoform X1
RefseqXP_024531824.12e-90transcription factor MYB3R-5 isoform X2
SwissprotQ6R0324e-70MB3R5_ARATH; Transcription factor MYB3R-5
SwissprotQ9S7G79e-70MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLD8QRN81e-106D8QRN8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ372851e-107(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-72myb domain protein 3r-5
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]