PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

76899

Common Name

SELMODRAFT_412016, SUPb-2

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 76aa MW: 8518.32 Da PI: 8.5216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
76899	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H 76899 49 YSCSFCAREFRTAQALGGHMNVH 71 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.49E-7	46	75	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	47	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.5E-6	49	73	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.801	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MANWRASSAR QQWNSRAPTA AAAEDDSWEV RAFAEDAASC SGQWPPRSYS CSFCAREFRT 60 AQALGGHMNV HRRERA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	7e-14	44	71	2	29	superman protein
2l1o_A	7e-14	44	71	2	29	Transcriptional regulator SUPERMAN
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may regulate cell division and growth. {ECO:0000269\|PubMed:12154136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002971169.1	4e-49	zinc finger protein STAMENLESS 1
Refseq	XP_024542105.1	4e-49	zinc finger protein STAMENLESS 1
Swissprot	O80942	3e-19	ZFP10_ARATH; Zinc finger protein 10
TrEMBL	D8RJS5	9e-48	D8RJS5_SELML; EPF-type Cis2-His2 zinc finger transcription factor
STRING	EFJ27767	1e-48	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP576	15	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-24	C2H2 family protein

Link Out ? help Back to Top
Phytozome	76899
Entrez Gene	9642122

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]