PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 77165
Common NamePAT1-1, SELMODRAFT_449932
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 376aa    MW: 40860.2 Da    PI: 7.4145
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
77165genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.43.5e-13253742373
   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
            ++lLl cAe +++gd++la+ +++rl++ +  +g+pm+Rlaay++e+L ar+++s+++l++al+++e       e l+a+++ +ev+P++kf++++aN aI ea
  77165   5 RQLLLLCAESIANGDFALAEVVISRLNQVVCIYGQPMERLAAYMVEGLVARIQSSGTGLCRALRCKEPV---GNEILSAMQVMYEVCPYIKFGYMAANGAIAEA 105
            689*****************************************************************8...99****************************** PP

   GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
            ++ e rvHiiDf+i qG+Q++aL+qaLa Rp+gpp++RiTgvg+p++g      + ++g+rLa +A+  gvp+ef+++  +     +  +L+ +pgEalaVn++
  77165 106 LKDEPRVHIIDFEIAQGTQYIALIQALARRPGGPPTVRITGVGDPAAGvaAPGGVAAVGRRLAVLAADHGVPLEFHAVPLSGAGVTDAAALQRRPGEALAVNFA 209
            **********************************************99999999***********************999999999****************** PP

   GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
            +qlh+++desvs++++rd++L++ ksl Pk+v++veqea++n+++Fl+rf e+l+yy a+f+sl+++lpr+s+eri+vE+++l+r++vn++acegaer+erhe 
  77165 210 MQLHHMPDESVSVSNPRDRLLRMAKSLGPKIVTLVEQEANTNTAPFLARFKESLSYYGAVFESLDVTLPRQSKERISVEQHCLARDLVNLIACEGAERIERHEV 313
            ******************************************************************************************************** PP

   GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
            ++kWr+r+++aGFk++pls ++++++++ll+++  d y++ ee+g ++lgW dr+Lvs+SaW
  77165 314 MGKWRARMSMAGFKQYPLSRYVNQTISCLLKTYC-DKYKLSEEDGVIYLGWLDRSLVSASAW 374
            *********************************9.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.9811356IPR005202Transcription factor GRAS
PfamPF035141.2E-1295374IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGDPRQLLLL CAESIANGDF ALAEVVISRL NQVVCIYGQP MERLAAYMVE GLVARIQSSG  60
TGLCRALRCK EPVGNEILSA MQVMYEVCPY IKFGYMAANG AIAEALKDEP RVHIIDFEIA  120
QGTQYIALIQ ALARRPGGPP TVRITGVGDP AAGVAAPGGV AAVGRRLAVL AADHGVPLEF  180
HAVPLSGAGV TDAAALQRRP GEALAVNFAM QLHHMPDESV SVSNPRDRLL RMAKSLGPKI  240
VTLVEQEANT NTAPFLARFK ESLSYYGAVF ESLDVTLPRQ SKERISVEQH CLARDLVNLI  300
ACEGAERIER HEVMGKWRAR MSMAGFKQYP LSRYVNQTIS CLLKTYCDKY KLSEEDGVIY  360
LGWLDRSLVS ASAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-6663746374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961994.10.0scarecrow-like protein 21
SwissprotQ8GVE11e-163CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
SwissprotQ9LDL71e-163PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLD8QRI20.0D8QRI2_SELML; GRAS family protein
TrEMBLD8RJC60.0D8RJC6_SELML; Uncharacterized protein PAT1-2
STRINGEFJ276900.0(Selaginella moellendorffii)
STRINGEFJ372540.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-153GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]
  7. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]