PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 77618
Common NameMICPUN_77618
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 160aa    MW: 18528.3 Da    PI: 8.4674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
77618genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-15853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
            77618  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.91.5e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT +Ede+l+++ k++++  W+t+a  +g  Rt+ qc +r+ k+l
            77618  60 TEWTRQEDEKLLHLAKLMPTQ-WRTVAPIVG--RTPAQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.567157IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-19556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139219.0E-141070No hitNo description
CDDcd001676.35E-121053No hitNo description
SuperFamilySSF466893.82E-2133109IPR009057Homeodomain-like
CDDcd116591.68E-3055106No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129415.20958107IPR017930Myb domain
SMARTSM007173.7E-1158105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRILIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTRQEDEKL LHLAKLMPTQ WRTVAPIVGR TPAQCLERYE KLLDAACQQD SNDALDDPRR  120
LKPGEIDPNP ESKPARPDPV DMDEEEKEML SEARARLANT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L6e-9221603162Cell division cycle 5-like protein
5xjc_L6e-9221603162Cell division cycle 5-like protein
5yzg_L6e-9221603162Cell division cycle 5-like protein
5z56_L6e-9221603162Cell division cycle 5-like protein
5z57_L6e-9221603162Cell division cycle 5-like protein
5z58_L6e-9221603162Cell division cycle 5-like protein
6ff4_L6e-9221603162Cell division cycle 5-like protein
6ff7_L6e-9221603162Cell division cycle 5-like protein
6icz_L6e-9221603162Cell division cycle 5-like protein
6id0_L6e-9221603162Cell division cycle 5-like protein
6id1_L6e-9221603162Cell division cycle 5-like protein
6qdv_O6e-9221603162Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015741e-161CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507152.11e-114predicted protein, partial
RefseqXP_002507153.11e-111predicted protein
SwissprotP929481e-102CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLC1FDL91e-110C1FDL9_MICCC; Uncharacterized protein
TrEMBLC1FDM01e-112C1FDM0_MICCC; Uncharacterized protein (Fragment)
STRINGXP_002507153.11e-111(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-104cell division cycle 5
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]