PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

77868

Common Name

SELMODRAFT_77868

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 331aa MW: 36082.7 Da PI: 7.0176

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
77868	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	181	239	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l +l+ a l++e+ 77868 181 KRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTAGLTTEN 239 9************************************************9999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-17	177	241	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.162	179	242	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-11	181	236	No hit	No description
SuperFamily	SSF57959	2.11E-11	181	233	No hit	No description
Pfam	PF00170	1.8E-9	181	239	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.12E-23	182	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MQDVSSTPQY SPPSSSRDTN ANNNATNNSA NSGEPVRRFG HHRRAQSEIA FRLPEALSDF 60 HTNNGVNNSG GGGGGGGGGA ATNLSEMPAL SDDVGEDLLS IYIDMEKMSS PYGASNKHDS 120 GGVAALGSQQ PGHHHHARSL SMDGALQGFN ADAHDLDVES AEAKRAAAAA KLAELALVDP 180 KRAKRILANR QSAARSKERK MRYISELERK VQTLQTEATT LSAQLTMLQR DTAGLTTENN 240 ELKLRLQAME QQAQLRDALN DALKDEVQRL KIATGQISGE NGQHQLMNHQ QQQYFHHQLS 300 PQQLQQLQQL KSSPQQQQQQ QQQTDFFQCR *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024517900.1	1e-168	transcription factor RF2b
Swissprot	Q04088	1e-69	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	D8QUM0	0.0	D8QUM0_SELML; Uncharacterized protein
STRING	EFJ36318	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	6e-59	bZIP family protein

Link Out ? help Back to Top
Phytozome	77868
Entrez Gene	9661992

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]