PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 77979
Common NameSELMODRAFT_129832, SELMODRAFT_77979, WRKY_12, WRKY_34
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 95aa    MW: 10703.2 Da    PI: 10.6664
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
77979genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-322482259
           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  77979 24 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPTMLIITYTSEHNHP 82
           69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.1551884IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-332184IPR003657WRKY domain
SuperFamilySSF1182907.06E-282284IPR003657WRKY domain
SMARTSM007744.6E-372383IPR003657WRKY domain
PfamPF031061.7E-272582IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MQQKRIVCVP VAGGGKPTGE VLPSDMWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ  60
VERSRNDPTM LIITYTSEHN HPWPAHRNSL AGTTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24485680Disease resistance protein RRS1
5w3x_D3e-24485680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024518793.18e-65probable WRKY transcription factor 14 isoform X2
SwissprotO647474e-49WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLD8QUP89e-65D8QUP8_SELML; Uncharacterized protein WRKY_12 (Fragment)
STRINGEFJ095352e-65(Selaginella moellendorffii)
STRINGEFJ363282e-65(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-51WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]