PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 78303
Common NameSELMODRAFT_38058
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 90aa    MW: 10368 Da    PI: 10.7294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
78303genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g+W +eEde+lv +++++G ++W++ +++   ++R++k+c++rw +yl
            78303 14 KGPWQPEEDEKLVAYIRKHGHENWRALPEKAAgLNRCGKSCRLRWTNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-25865IPR009057Homeodomain-like
PROSITE profilePS5129422.469966IPR017930Myb domain
SMARTSM007172.8E-131364IPR001005SANT/Myb domain
PfamPF002497.0E-161462IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-201589IPR009057Homeodomain-like
CDDcd001676.13E-101662No hitNo description
Gene3DG3DSA:1.10.10.601.8E-56689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRPPRRNKE GLTKGPWQPE EDEKLVAYIR KHGHENWRAL PEKAAGLNRC GKSCRLRWTN  60
YLRPDIKRGG ITAQEEVLII WLHSILGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-161289580B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024518613.12e-57transcription factor MYB106
RefseqXP_024541225.12e-57transcription factor MYB106
SwissprotQ9SBF39e-41MYB92_ARATH; Transcription factor MYB92
TrEMBLD8QVM22e-58D8QVM2_SELML; Uncharacterized protein
TrEMBLD8SAB13e-58D8SAB1_SELML; Uncharacterized protein (Fragment)
STRINGEFJ187235e-59(Selaginella moellendorffii)
STRINGEFJ360853e-59(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.14e-43myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]