PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 80246
Common NameMICPUN_80246
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 88aa    MW: 10302.6 Da    PI: 8.4948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
80246genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16245448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT eEde+l  +v+++G + W++I+ +m   + +kqc+ rwq+yl
            80246  2 WTDEEDEQLRALVAEYGVKKWALISTKMA-AKGAKQCRRRWQNYL 45
                     *****************************.999***********7 PP
2Myb_DNA-binding42.61.4e-135288240
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     g W++eEd +l+++++++G++ W+ Iar++  gRt++ +
            80246 52 GGWSEEEDRILLEGHRLHGNK-WTEIARMVT-GRTDNAV 88
                     56*******************.********9.****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.975149IPR017930Myb domain
SuperFamilySSF466894.87E-26188IPR009057Homeodomain-like
PfamPF139211.4E-17259No hitNo description
SMARTSM007171.4E-10247IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-23252IPR009057Homeodomain-like
CDDcd001676.42E-13245No hitNo description
SMARTSM007173.9E-45088IPR001005SANT/Myb domain
PROSITE profilePS5129416.0245088IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-175388IPR009057Homeodomain-like
CDDcd001672.72E-85488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MWTDEEDEQL RALVAEYGVK KWALISTKMA AKGAKQCRRR WQNYLNNDIK QGGWSEEEDR  60
ILLEGHRLHG NKWTEIARMV TGRTDNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-312881096B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013241e-146CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501194.14e-59predicted protein, partial
SwissprotP489723e-29MYBB_MOUSE; Myb-related protein B
TrEMBLC1E3421e-57C1E342_MICCC; Uncharacterized protein (Fragment)
STRINGXP_002501194.12e-58(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.21e-31myb domain protein 88
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]