PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 80553
Common NameSELMODRAFT_127613
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 138aa    MW: 16302.5 Da    PI: 10.5326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
80553genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-182368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l+++v+ +G+ +W+ Ia+++  gR++k+c++rw++ 
            80553 23 RGHWRPAEDEKLKELVRIHGPQNWNVIAEKLE-GRSGKSCRLRWFNQ 68
                     899*****************************.***********996 PP
2Myb_DNA-binding605e-1975119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ +
            80553  75 RKPFSEEEEERLLAAHQLHGNK-WAMIARIFP-GRTDNAVKNHWHVV 119
                      789*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3991869IPR017930Myb domain
SuperFamilySSF466891.03E-2922116IPR009057Homeodomain-like
SMARTSM007177.9E-152271IPR001005SANT/Myb domain
PfamPF002496.2E-172368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-262476IPR009057Homeodomain-like
CDDcd001672.42E-122667No hitNo description
PROSITE profilePS5129427.07370124IPR017930Myb domain
SMARTSM007171.3E-1574122IPR001005SANT/Myb domain
PfamPF002491.5E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2277124IPR009057Homeodomain-like
CDDcd001672.30E-686120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNDESENSVD RDADCSQSKL CHRGHWRPAE DEKLKELVRI HGPQNWNVIA EKLEGRSGKS  60
CRLRWFNQLD PRINRKPFSE EEEERLLAAH QLHGNKWAMI ARIFPGRTDN AVKNHWHVVM  120
ARKLRERSRM QGRKKSQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32231247108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122134KLRERSRMQGRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517762.13e-98myb-like protein Q
SwissprotQ9SEZ41e-65MY105_ARATH; Transcription factor MYB105
TrEMBLD8SXZ52e-97D8SXZ5_SELML; Uncharacterized protein
STRINGEFJ107063e-98(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-68myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]