PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

80563

Common Name

MICPUN_80563

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 79aa MW: 8866.14 Da PI: 9.1592

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
80563	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.2e-06	55	77	1	21
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 +kC+ Cgk F+++++Lk+H r 80563 55 FKCEheGCGKAFKTSEHLKQHAR 77 89*******************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	24	24	49	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.1E-5	31	54	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.73E-11	41	79	No hit	No description
PROSITE profile	PS50157	12.944	55	79	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.3E-11	55	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.003	55	79	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MPAQHTTLAQ HGALLHPHDR IRLRACPVPG CDFVTNQGRA RLEKHLATHG SEKPFKCEHE 60 GCGKAFKTSE HLKQHARCH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	1e-130	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501289.1	4e-52	predicted protein, partial
TrEMBL	C1E3G2	1e-50	C1E3G2_MICCC; Uncharacterized protein (Fragment)
STRING	XP_002501289.1	2e-51	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	9e-06	C2H2 family protein

Link Out ? help Back to Top
Phytozome	80563
Entrez Gene	8242958

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]