PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 80646
Common NameSELMODRAFT_7895, SELMODRAFT_80646
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 108aa    MW: 12755.5 Da    PI: 8.6461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
80646genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05123323
             ET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
             C+   C+k+Fs +  L rH r+H
    80646  1 CKheGCDKVFSEPGGLYRHARVH 23
             66679****************99 PP
2zf-C2H216.42.6e-052852123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             y+C+   C+++F  +s LkrH   H
    80646 28 YVCHyeGCNRRFLERSKLKRHYLIH 52
             9********************9988 PP
3zf-C2H2218.8e-075882123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             ++C    Cgk Fs   nL++H++tH
    80646 58 FVCLheGCGKAFSLDFNLRSHMKTH 82
             789999******************9 PP
4zf-C2H211.20.001187108120
              EEET..TTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHi 20 
              ++Cp   C k + +++ L+ H+
    80646  87 HECPheGCEKKYCQNYKLRAHM 108
              78*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-5135No hitNo description
PROSITE patternPS000280123IPR007087Zinc finger, C2H2
SMARTSM003556.7123IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-8123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.4E-132447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.6922857IPR007087Zinc finger, C2H2
SMARTSM003550.00362852IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803052IPR007087Zinc finger, C2H2
SuperFamilySSF576675.8E-153986No hitNo description
Gene3DG3DSA:3.30.160.601.5E-214885IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00465882IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.3185887IPR007087Zinc finger, C2H2
PROSITE patternPS0002806082IPR007087Zinc finger, C2H2
SMARTSM0035527087108IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-689108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
CKHEGCDKVF SEPGGLYRHA RVHGDRPYVC HYEGCNRRFL ERSKLKRHYL IHTGEKSFVC  60
LHEGCGKAFS LDFNLRSHMK THTGEYHECP HEGCEKKYCQ NYKLRAHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-3311088118PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524049.11e-75zinc finger protein squeeze isoform X6
RefseqXP_024535276.11e-75zinc finger protein squeeze isoform X6
SwissprotQ2V3L34e-41YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLD8QY405e-73D8QY40_SELML; Uncharacterized protein (Fragment)
STRINGEFJ242818e-74(Selaginella moellendorffii)
STRINGEFJ355438e-74(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-43C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]