PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

80923

Common Name

SELMODRAFT_80923

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

E2F/DP

Protein Properties

Length: 277aa MW: 31017.2 Da PI: 9.4887

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
80923	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	89.8	1.8e-28	17	97	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k+Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg 80923 17 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpnglvgspdqqyDEKNIRRRVYDALNVLMAMDIISK-EKKEIQWKG 97 79******...*999**************************************************.*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.0E-46	12	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	5.7E-34	15	97	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	2.58E-22	18	98	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	2.7E-26	18	97	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF144074	1.57E-39	104	231	No hit	No description
SMART	SM01138	4.9E-57	104	274	IPR014889	Transcription factor DP, C-terminal
CDD	cd14458	8.35E-44	105	206	IPR014889	Transcription factor DP, C-terminal
Pfam	PF08781	1.4E-38	105	211	IPR014889	Transcription factor DP, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042023	Biological Process	DNA endoreduplication
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
RKKKRGHRAA IGGEKGGKGL RHFSMKVCEK VESKGRTTYN EVADELVAEF TNPNGLVGSP 60 DQQYDEKNIR RRVYDALNVL MAMDIISKEK KEIQWKGLPS TSFTDAEQLK EEQLRVRSRI 120 EKKKKYLQEL QDQIVGIQNL IHRNERMYNG TGNFPAGGVA LPFILVQTRP QATVEVEISE 180 DMQVVHFDFN SSPFELHDDA SILKAMNFCD PGSKPGGGSK HENGGFDASP MDDGSSPLPS 240 MYHHHHHHGR SPRMMKNGLS PPPLPGILKA RVKQEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_B	3e-43	13	102	5	93	PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:16920782}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC158179	1e-131	Selaginella moellendorffii clone JGIASXY-5A11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964245.2	0.0	transcription factor-like protein DPB isoform X5
Swissprot	Q9FNY2	1e-111	DPB_ARATH; Transcription factor-like protein DPB
TrEMBL	D8R0G5	0.0	D8R0G5_SELML; Uncharacterized protein (Fragment)
STRING	EFJ34578	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2511	17	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-114	Transcription factor DP

Link Out ? help Back to Top
Phytozome	80923
Entrez Gene	9654876

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]