PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

81013

Common Name

SELMODRAFT_81013

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 251aa MW: 28648.6 Da PI: 9.7786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
81013	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.2e-13	45	90	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + Er+RR+ +N+++++Lr+l+P++ K + a+i+ A++Y+k+L 81013 45 NHFATERQRREYLNEKYQTLRSLVPNP-----SKADRASIVADAIDYVKEL 90 7***********************9.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.43E-10	40	95	No hit	No description
SuperFamily	SSF47459	1.14E-16	40	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.707	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-15	45	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-11	45	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRPPGLLDYE DRDNSAGHEE RRLFPSLFEK KDFTFAKGAE SRGINHFATE RQRREYLNEK 60 YQTLRSLVPN PSKADRASIV ADAIDYVKEL KRTVQELQLL VEEKRRGSNK RCKASPDDPS 120 ATDVESTTAM QQPGGTRVSK ETTFLGDGSQ LRSSWLQRTS QMGTHIDVRI VDDEVNIKLT 180 QRRRRNYVLL AVLRSLDELR LDLLHANGAS IGEHHIFMFN TKVVLAPSSF LLSLFLFYFF 240 LFSSALILPR *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269\|PubMed:23385589, ECO:0000269\|PubMed:23519457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964440.2	1e-162	transcription factor bHLH91
Swissprot	Q7X8R0	8e-52	EAT1_ORYSJ; Transcription factor EAT1
TrEMBL	D8QZC5	0.0	D8QZC5_SELML; Uncharacterized protein
STRING	EFJ34773	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2659	14	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	81013
Entrez Gene	9654524

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]