PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

81371

Common Name

SELMODRAFT_128854, SELMODRAFT_81371, WRKY_23, WRKY_33

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WRKY

Protein Properties

Length: 62aa MW: 7075.12 Da PI: 9.0402

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
81371	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3.1e-33	1	60	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt++ gCpv+k+v+r+aed++++++tYeg+Hnh+ 81371 1 MNDGCQWRKYGQKMAKGNPCPRAYYRCTMSpGCPVRKQVQRCAEDTSILVTTYEGTHNHP 60 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	7.19E-29	1	62	IPR003657	WRKY domain
PROSITE profile	PS50811	29.539	1	62	IPR003657	WRKY domain
SMART	SM00774	1.2E-38	1	61	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.5E-32	2	61	IPR003657	WRKY domain
Pfam	PF03106	1.6E-29	2	60	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MNDGCQWRKY GQKMAKGNPC PRAYYRCTMS PGCPVRKQVQ RCAEDTSILV TTYEGTHNHP 60 LP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-25	1	62	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964569.2	2e-40	WRKY transcription factor 42
Refseq	XP_002988828.2	1e-40	WRKY transcription factor 42
Swissprot	Q9C9F0	1e-38	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A078FE95	2e-37	A0A078FE95_BRANA; BnaA02g13630D protein
TrEMBL	D8R033	7e-40	D8R033_SELML; Uncharacterized protein WRKY_23 (Fragment)
STRING	EFJ10090	1e-40	(Selaginella moellendorffii)
STRING	EFJ34902	1e-40	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	5e-41	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	81371
Entrez Gene	9653964 \| 9661836

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]