PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 81609
Common NameSELMODRAFT_129907, SELMODRAFT_81609
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 128aa    MW: 15084 Da    PI: 5.6947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
81609genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-192578356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              k+++++ +q++ Le++Fe+++++  e++ +LAk+l+L+ rqV vWFqNrRa++k
     81609 25 KKRRLSVDQVKSLERHFEQDNKLEPERKLQLAKELSLQPRQVAVWFQNRRARWK 78
              456899***********************************************9 PP
2HD-ZIP_I/II129.21.7e-4124115192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrls +qvk+LE++Fe+++kLeperK +la+eL lqprqvavWFqnrRAR+ktkqlEkdy+aLk+++dal+ + ++L ke++eL++e+ 
        81609  24 EKKRRLSVDQVKSLERHFEQDNKLEPERKLQLAKELSLQPRQVAVWFQNRRARWKTKQLEKDYDALKENLDALRGDYKSLLKEKQELEAEVC 115
                  69**************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.06E-201482IPR009057Homeodomain-like
PROSITE profilePS5007117.542080IPR001356Homeobox domain
SMARTSM003891.3E-172384IPR001356Homeobox domain
CDDcd000862.22E-152581No hitNo description
PfamPF000461.3E-162578IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-202788IPR009057Homeodomain-like
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PfamPF021839.2E-1180114IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDHASDEEDA IDDDPGAGQQ HHIEKKRRLS VDQVKSLERH FEQDNKLEPE RKLQLAKELS  60
LQPRQVAVWF QNRRARWKTK QLEKDYDALK ENLDALRGDY KSLLKEKQEL EAEVCQIFFL  120
FVLSFAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1581790.0Selaginella moellendorffii clone JGIASXY-5A11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964248.22e-75homeobox-leucine zipper protein HOX20
RefseqXP_002989565.22e-75homeobox-leucine zipper protein HOX20
SwissprotQ8S7W97e-38HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
SwissprotQ940J12e-38ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLD8R0G92e-86D8R0G9_SELML; Uncharacterized protein
STRINGEFJ094413e-87(Selaginella moellendorffii)
STRINGEFJ345813e-87(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-41homeobox protein 16
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]