PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

82663

Common Name

SELMODRAFT_450176

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 306aa MW: 34962.4 Da PI: 8.2881

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
82663	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	180.6	1.2e-55	19	302	89	374
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 P +++++ a I + +g++r+Hi+D++i++G QWp ++aL++Rp+gpp ++iTg++ + ++etg++L +fA+++gv+++f++++++++e ++++ 82663 19 PSFRVTQRFAACNIFNVCQGAKRIHIVDYGIQYGCQWPHVIKALSQRPQGPPAMKITGIDL----PRVDVKETGRNLVEFARSCGVSLDFDAITSTSWELVQPK 118 899999999999***********************************************....89*********************999999999886 PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv..vveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgre 293 ++ ++ l+Vn+ l+l +l ++ +++r+ + + v sl+P++++ v + ++++s+ F +rf l++ + ++ +e+ l +e+ e+ +++++ 82663 119 ---THVEDLLIVNCNLRLRHLREDGSVGNNPRKLFFEKVYSLKPDLFIqcVLDATSNLSSPFFIQRFEGVLDTLFTRMELFETLLLQEDmPEEYDFMGSIIAKA 219 ...56899*********866666666************983344566777999**999999888888888877777766666666666 PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll.rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i++vva eg er+er +++++W +r ++aGF+ +p++ ++ + +k + + k ++ +++ + ++l+lgWk+ ++++SaWr 82663 220 IMDVVALEGVERIERANSYRTWDSRARRAGFELLPVRLETIEVVKDVWcSSSKlNNNFKLGVDGHWLLLGWKESIVFAMSAWR 302 ****************************9998876655555443033334577***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.386	1	280	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-53	19	302	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MVKGIRERHS VHVRLLNLPS FRVTQRFAAC NIFNVCQGAK RIHIVDYGIQ YGCQWPHVIK 60 ALSQRPQGPP AMKITGIDLP RVDVKETGRN LVEFARSCGV SLDFDAITST SWELVQPKTH 120 VEDLLIVNCN LRLRHLREDG SVGNNPRKLF FEKVYSLKPD LFIQCVLDAT SNLSSPFFIQ 180 RFEGVLDTLF TRMELFETLL LQEDMPEEYD FMGSIIAKAI MDVVALEGVE RIERANSYRT 240 WDSRARRAGF ELLPVRLETI EVVKDVWCSS SKLNNNFKLG VDGHWLLLGW KESIVFAMSA 300 WRTSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-15	32	302	101	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965365.1	0.0	scarecrow-like protein 31
TrEMBL	D8R149	0.0	D8R149_SELML; GRAS family protein
STRING	EFJ34203	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	5e-48	GRAS family protein

Link Out ? help Back to Top
Phytozome	82663
Entrez Gene	9659412

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]