PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 8371
Common NameMICPUCDRAFT_8371
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 81aa    MW: 8951.19 Da    PI: 10.1354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
8371genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055220623
             TTEEESSHHHHHHHHHH.T CS
  zf-C2H2  6 CgksFsrksnLkrHirt.H 23
             Cg+sF++  +   H r+ H
     8371  2 CGRSFKHATQKAIHVRKvH 20
             ****************999 PP
2zf-C2H221.46.5e-072650123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             ++C+   Cg+sF ++ +Lk H +tH
     8371 26 FTCEheGCGRSFYSSGDLKAHGKTH 50
             89*********************99 PP
3zf-C2H225.82.7e-085679123
             EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
             ++Cp Cgks s++ +Lk+Hi+  H
     8371 56 FECPECGKSMSSRNSLKVHIKAlH 79
             89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035597120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-6224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-152074No hitNo description
Gene3DG3DSA:3.30.160.602.7E-132546IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0482650IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5682655IPR007087Zinc finger, C2H2
PROSITE patternPS0002802850IPR007087Zinc finger, C2H2
PfamPF128740.0523350No hitNo description
Gene3DG3DSA:3.30.160.601.1E-104776IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4875681IPR007087Zinc finger, C2H2
SMARTSM003554.3E-45679IPR015880Zinc finger, C2H2-like
PfamPF138941.6E-55679No hitNo description
PROSITE patternPS0002805879IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
GCGRSFKHAT QKAIHVRKVH TGERPFTCEH EGCGRSFYSS GDLKAHGKTH STTKPFECPE  60
CGKSMSSRNS LKVHIKALHT L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mey_C9e-162771082CONSENSUS ZINC FINGER
1mey_F9e-162771082CONSENSUS ZINC FINGER
1mey_G9e-162771082CONSENSUS ZINC FINGER
2i13_A2e-1527627182Aart
2i13_B2e-1527627182Aart
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058558.12e-53predicted protein, partial
SwissprotQ6P2A17e-17PRDM9_DANRE; Histone-lysine N-methyltransferase PRDM9
TrEMBLC1MRS35e-52C1MRS3_MICPC; Predicted protein (Fragment)
STRINGXP_003058558.19e-53(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1065024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-11C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]