PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 8400
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Whirly
Protein Properties Length: 152aa    MW: 16079.3 Da    PI: 10.0775
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
8400genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly218.65.8e-6851431139
  Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkalkvePlpdG 102
             +vyktk+alk+kavr+tfe+++sg++++kraGg+llelanata+r+ydW++k+sf+lsate+ael+d +as+++c+ffhdp+a+g+n+G+v+ka+kveP+pdG
    8400   5 GVYKTKGALKLKAVRATFESDASGRRIMKRAGGVLLELANATAPRQYDWGNKGSFMLSATEAAELADrMASNAPCSFFHDPGAGGANRGNVNKAFKVEPMPDG 107
             79***************************************************************************************************** PP

  Whirly 103 s.Glfvnlsvtnslvkgnesf.svPvskaefavlrsllv 139
             s Glfvnl++t++   gn+sf svPvs++e+a+lr++lv
    8400 108 SgGLFVNLQTTSG---GNKSFvSVPVSYGESAALRHILV 143
             *9**********9...9999989*************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544471.88E-201152IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.102.0E-471152IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.1E-486141IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
FVDYGVYKTK GALKLKAVRA TFESDASGRR IMKRAGGVLL ELANATAPRQ YDWGNKGSFM  60
LSATEAAELA DRMASNAPCS FFHDPGAGGA NRGNVNKAFK VEPMPDGSGG LFVNLQTTSG  120
GNKSFVSVPV SYGESAALRH ILVYLVPKIA GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A3e-26115239190p24: plant transcriptional regulator PBF-2
1l3a_B3e-26115239190p24: plant transcriptional regulator PBF-2
1l3a_C3e-26115239190p24: plant transcriptional regulator PBF-2
1l3a_D3e-26115239190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005960.0CP000596.1 Ostreococcus lucimarinus CCE9901 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421958.11e-108predicted protein, partial
TrEMBLA4S8W41e-107A4S8W4_OSTLU; Uncharacterized protein (Fragment)
STRINGABP002521e-108(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.22e-26ssDNA-binding transcriptional regulator