PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 84151
Common NameSELMODRAFT_84151
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 162aa    MW: 18739.4 Da    PI: 9.8689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
84151genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-051033223
             EET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  2 kCp..dCgksFsrksnLkrHirtH 23
              Cp   C+k+F ++ +L  H++ H
    84151 10 DCPhvGCNKRFATPGSLGDHLNEH 33
             69999****************999 PP
2zf-C2H216.32.7e-054163323
             ET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
             C+  +C+ +Fs+k +L rHi++H
    84151 41 CSfeNCSLRFSSKQLLSRHIKKH 63
             88889*****************9 PP
3zf-C2H214.10.000146791123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             +kC+   C+k+F  ++ L++H++tH
    84151 67 HKCTfeGCNKRFAFRERLVVHQKTH 91
             799999******************8 PP
4zf-C2H219.23.3e-0698121223
              EET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
              +Cp   CgksF+   +L+ H rtH
    84151  98 VCPfeGCGKSFKWLNSLNGHKRTH 121
              79999******************9 PP
5zf-C2H217.61e-05127151123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + C+   C +sF  k +L+rHirtH
    84151 127 FHCTfsGCERSFGYKVDLTRHIRTH 151
              789999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-7732IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012933IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967938IPR007087Zinc finger, C2H2
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
SuperFamilySSF576676.96E-102078No hitNo description
Gene3DG3DSA:3.30.160.601.1E-93363IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0163963IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5773968IPR007087Zinc finger, C2H2
PROSITE patternPS0002804163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-86494IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00676791IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.7366796IPR007087Zinc finger, C2H2
PROSITE patternPS0002806991IPR007087Zinc finger, C2H2
SuperFamilySSF576679.4E-1678132No hitNo description
Gene3DG3DSA:3.30.160.601.8E-1495120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2E-497121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.85697126IPR007087Zinc finger, C2H2
PROSITE patternPS00028099121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-15121153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-8122153No hitNo description
SMARTSM003556.7E-4127151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133127156IPR007087Zinc finger, C2H2
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MLLLIDKTHD CPHVGCNKRF ATPGSLGDHL NEHNGQRPYL CSFENCSLRF SSKQLLSRHI  60
KKHERAHKCT FEGCNKRFAF RERLVVHQKT HCDDRPLVCP FEGCGKSFKW LNSLNGHKRT  120
HTGEKPFHCT FSGCERSFGY KVDLTRHIRT HYGQHARPNP R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A7e-26115414188Aart
2i13_B7e-26115414188Aart
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965828.21e-121zinc finger protein 391
TrEMBLD8R3B71e-115D8R3B7_SELML; Uncharacterized protein
STRINGEFJ332481e-116(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1524234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-23C2H2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]