PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

84560

Common Name

LAS-2, SELMODRAFT_95651

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 468aa MW: 51046.7 Da PI: 6.2673

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
84560	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	335.3	1.1e-102	61	465	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.....................kl 83 l+elL+ecA v+s+d ++a ++L +ls asp+gd+++Rla+yf ALa+ l + ++ +++ +++ +n l + + 84560 61 LRELLVECAASVTSSDWHRAIRCLVHLSRAASPHGDAVERLAFYFSAALARCLCSLSTPCASEIRSLLRL-NNLHFLLEEDqpppsfeddlfyysggaeeayLA 163 689**************************************************777777777665554.343333333356666677777778888766455 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp.......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 +++v+P+++fshl aNqaIleav++e++vHi+D++i+qGlQWp+L+qaL + + + +lRiTg g+ s le+tg rL++fA++l+++fef+ 84560 164 LNQVTPFIRFSHLSANQAILEAVDNERAVHIVDLGIMQGLQWPPLMQALPpT-LsssssssSTTLTLRITGTGP----SISLLEQTGARLRDFARTLHLDFEFD 262 ********************************************9632.2233343233559****....9*********************** PP GRAS 180 vl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklprese 280 ++ +++++ + ++L++++gEal+Vn++ qlh+ll +++ + + ++ L++++sl P++++v+e+e++h s+sFlerfl +l++y+a+fdslea+lp+ s 84560 263 AVctTSRHVVASLQQHLELRRGEALVVNCMTQLHKLL--PAAHRAALPHALEFMRSLCPRILTVAEKESEHdLSQSFLERFLVTLDHYVAVFDSLEATLPPRSP 364 843333333345678******************..66666778********************889************************** PP GRAS 281 erikvErellgreivnvvacegaerre.....rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr..veeesgslvlgWkdrpLvsvSaW 373 +r ++Er +l++ei+ +v g e rh+++++Wr+ +e+aGF+ vp s++a +qaklllr ++ dgyr ve+++gsl+l W+d+pLv++S W 84560 365 QRLMIERLVLAKEISGIVLEDGGGDDEnlavvRHQSFGNWRRDMEAAGFQLVPPSDFAIAQAKLLLRLHYpADGYRllVENQHGSLFLSWHDKPLVALSTW 465 **************998765433333449**************************************94346889**************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.665	35	443	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-100	61	465	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MQQQPPSSHQ HHHQEQPQFL GHTGGIGTGA GAGTGFGFGV GGAGSEGSSG GAGTHHNDGG 60 LRELLVECAA SVTSSDWHRA IRCLVHLSRA ASPHGDAVER LAFYFSAALA RCLCSLSTPC 120 ASEIRSLLRL NNLHFLLEED QPPPSFEDDL FYYSGGAEEA YLALNQVTPF IRFSHLSANQ 180 AILEAVDNER AVHIVDLGIM QGLQWPPLMQ ALPPTLSSSS SSSSTTLTLR ITGTGPSISL 240 LEQTGARLRD FARTLHLDFE FDAVCTTSRH VVASLQQHLE LRRGEALVVN CMTQLHKLLP 300 AAHRAALPHA LEFMRSLCPR ILTVAEKESE HDLSQSFLER FLVTLDHYVA VFDSLEATLP 360 PRSPQRLMIE RLVLAKEISG IVLEDGGGDD ENLAVVRHQS FGNWRRDMEA AGFQLVPPSD 420 FAIAQAKLLL RLHYPADGYR LLVENQHGSL FLSWHDKPLV ALSTWSC*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MQQQPPSSHQ HHHQEQPQFL GHTGGIGTGA GAGTGFGFGV GGAGSEGSSG GAGTHHNDGG  60
LRELLVECAA SVTSSDWHRA IRCLVHLSRA ASPHGDAVER LAFYFSAALA RCLCSLSTPC  120
ASEIRSLLRL NNLHFLLEED QPPPSFEDDL FYYSGGAEEA YLALNQVTPF IRFSHLSANQ  180
AILEAVDNER AVHIVDLGIM QGLQWPPLMQ ALPPTLSSSS SSSSTTLTLR ITGTGPSISL  240
LEQTGARLRD FARTLHLDFE FDAVCTTSRH VVASLQQHLE LRRGEALVVN CMTQLHKLLP  300
AAHRAALPHA LEFMRSLCPR ILTVAEKESE HDLSQSFLER FLVTLDHYVA VFDSLEATLP  360
PRSPQRLMIE RLVLAKEISG IVLEDGGGDD ENLAVVRHQS FGNWRRDMEA AGFQLVPPSD  420
FAIAQAKLLL RLHYPADGYR LLVENQHGSL FLSWHDKPLV ALSTWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-56	67	466	25	379	Protein SCARECROW
5b3h_A	3e-56	67	466	24	378	Protein SCARECROW
5b3h_D	3e-56	67	466	24	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965679.1	0.0	scarecrow-like protein 18
TrEMBL	D8RKA2	0.0	D8RKA2_SELML; Uncharacterized protein LAS-2
STRING	EFJ27408	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5491	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-70	GRAS family protein

Link Out ? help Back to Top
Phytozome	84560
Entrez Gene	9642973

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]