PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

84611

Common Name

SELMODRAFT_451357, WOX9-1

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WOX

Protein Properties

Length: 89aa MW: 10688 Da PI: 9.8361

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
84611	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.9	6.2e-17	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + R+++++eql+ L +lFe+ +++++++e+A l ++te++V +WF+Nr+a+ k+ 84611 27 KVRWKPNEEQLRMLVRLFEEeGDSINKQRIKEIAVDLarqgDVTEANVHNWFHNRKARAKR 87 67***************989***********************************97 PP
2	Wus_type_Homeobox	67.8	1.9e-22	27	89	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + RW P++eQ+++L +l+++ + nk++i++i+ L++ G ++++NV++WF NrkaR ++kq 84611 27 KVRWKPNEEQLRMLVRLFEEEGDSINKQRIKEIAVDLARQGDVTEANVHNWFHNRKARAKRKQ 89 68****************99*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.629	23	88	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.94E-12	25	88	IPR009057	Homeodomain-like
CDD	cd00086	3.37E-5	27	89	No hit	No description
Pfam	PF00046	1.4E-14	27	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-10	28	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MEESHYQQQQ QQQQQQALQE LPPAVVKVRW KPNEEQLRML VRLFEEEGDS INKQRIKEIA 60 VDLARQGDVT EANVHNWFHN RKARAKRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024526432.1	1e-53	ecdysone-induced protein 74EF isoform X1
Refseq	XP_024526433.1	1e-53	ecdysone-induced protein 74EF isoform X2
TrEMBL	D8R3X4	7e-56	D8R3X4_SELML; Uncharacterized protein WOX9-1
STRING	EFJ33362	1e-56	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	3e-19	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	84611
Entrez Gene	9634645

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]