PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

84708

Common Name

SELMODRAFT_117665, SELMODRAFT_84708

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Whirly

Protein Properties

Length: 227aa MW: 24602.1 Da PI: 6.9622

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
84708	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	159.9	7.2e-50	39	174	3	137
Whirly 3 yktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqs.falsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsG 104 yk+k al++ ++ptf+ dsg ++l+r+G+++le+a+++++r+ydW+kkq+ fals+ e+++++ l++ es effhdp +++s++G vrk+lk+eP +d G 84708 39 YKGKCALNMRLIKPTFKISDSGDAILSREGTVMLEFAPSISQRQYDWGKKQVlFALSVSELGQILALTPSESLEFFHDPNMGKSDAGMVRKSLKIEPTTDRNG 141 9************************************************769********************************************* PP Whirly 105 lfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +f+ l+v n++ k++ ++ +P+sk+efa++rs+ 84708 142 FFFGLTVANKVEKAEARLNIPISKGEFAIIRSA 174 ****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.3E-67	26	190	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	1.65E-50	31	195	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	1.6E-55	39	174	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0032211	Biological Process	negative regulation of telomere maintenance via telomerase
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045910	Biological Process	negative regulation of DNA recombination
GO:0009508	Cellular Component	plastid chromosome
GO:0009570	Cellular Component	chloroplast stroma
GO:0003697	Molecular Function	single-stranded DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003723	Molecular Function	RNA binding
GO:0042162	Molecular Function	telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAAHEATGEK LSALAVSLLA GSFVSETRPR RVFADHVFYK GKCALNMRLI KPTFKISDSG 60 DAILSREGTV MLEFAPSISQ RQYDWGKKQV LFALSVSELG QILALTPSES LEFFHDPNMG 120 KSDAGMVRKS LKIEPTTDRN GFFFGLTVAN KVEKAEARLN IPISKGEFAI IRSAANYALP 180 YLMGWHYATE VNGIDEAGAS GASVSGTTAP RSLVQPPSDI DPEWDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	7e-54	31	212	37	212	p24: plant transcriptional regulator PBF-2
1l3a_B	7e-54	31	212	37	212	p24: plant transcriptional regulator PBF-2
1l3a_C	7e-54	31	212	37	212	p24: plant transcriptional regulator PBF-2
1l3a_D	7e-54	31	212	37	212	p24: plant transcriptional regulator PBF-2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525979.1	1e-152	single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
Refseq	XP_024525980.1	1e-152	single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
Refseq	XP_024543888.1	1e-152	single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
Refseq	XP_024543889.1	1e-152	single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
TrEMBL	D8R3J9	1e-166	D8R3J9_SELML; Uncharacterized protein
STRING	EFJ15931	1e-167	(Selaginella moellendorffii)
STRING	EFJ33294	1e-167	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2316	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	2e-54	ssDNA-binding transcriptional regulator

Link Out ? help Back to Top
Phytozome	84708
Entrez Gene	9634310 \| 9654050

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]