PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

85536

Common Name

SELMODRAFT_85536

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ZF-HD

Protein Properties

Length: 171aa MW: 18928.6 Da PI: 9.2152

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
85536	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.6	9.3e-31	14	66	6	59
ZF-HD_dimer 6 YkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y +ClkNhAa +Ggha+DGCgEfmp geegt +alkCaAC+CHRnFHRreve 85536 14 YTQCLKNHAAGIGGHALDGCGEFMPC-GEEGTLDALKCAACDCHRNFHRREVEG 66 9**********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	27.032	14	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.5E-27	14	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.1E-29	14	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-21	14	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.5E-32	98	169	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-19	98	168	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.5E-27	107	163	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
RLRGGGGGGG GRGYTQCLKN HAAGIGGHAL DGCGEFMPCG EEGTLDALKC AACDCHRNFH 60 RREVEGEPSC LECHHRKDKK RLMLPSRSGE LDDQGVYMPN AGGPNLKKRF RTKFTGDQKE 120 RMLAFADKVG WKIQKHDEAE VQQFCNEVGV KRHVLKVWMH NNKHTLGKKM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-26	108	165	18	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	11	RGGGGGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024523652.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523653.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523654.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523655.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523656.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523658.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523659.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523660.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024523661.1	1e-116	zinc-finger homeodomain protein 2
Refseq	XP_024543023.1	1e-116	zinc-finger homeodomain protein 2-like
Refseq	XP_024543024.1	1e-116	zinc-finger homeodomain protein 2-like
Refseq	XP_024543025.1	1e-116	zinc-finger homeodomain protein 2-like
Refseq	XP_024543026.1	1e-116	zinc-finger homeodomain protein 2-like
Refseq	XP_024543027.1	1e-116	zinc-finger homeodomain protein 2-like
Refseq	XP_024543028.1	1e-116	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	7e-61	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	D8R5F8	1e-122	D8R5F8_SELML; Uncharacterized protein (Fragment)
STRING	EFJ32145	1e-123	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-59	homeobox protein 22

Link Out ? help Back to Top
Phytozome	85536
Entrez Gene	9652684

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]