PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 855832
Common NameARALYDRAFT_655194
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 254aa    MW: 27026 Da    PI: 8.7982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
855832genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322e-10120827
             GGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
             f+++tGtCk+G++CkF+H++
   855832  1 FYLKTGTCKFGASCKFHHPK 20
             8*****************96 PP
2zf-CCCH36.21e-114466527
             --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
             +C+++++tG+Ck+G +CkF+H++
   855832 44 ECSYYLKTGQCKFGITCKFHHPQ 66
             7********************97 PP
3zf-CCCH38.91.5e-12203229127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              +++++C+++++tG Ck+G +CkF+H++
   855832 203 PGEPECQYYLKTGDCKFGTSCKFHHPR 229
              5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2120IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7323967IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-53966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-64367IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-94466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-44565IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5202229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356202230IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9204229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6207231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5208230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
FYLKTGTCKF GASCKFHHPK NAGGSMTHVP LNIYGYPVRE GDNECSYYLK TGQCKFGITC  60
KFHHPQPAGT TVPPPPPASA PQFYPSVQSL MPDQYGGPSS SLRVARTLLP GSYMQGAYGP  120
MLLTPGVVPI PGWSPYSSLS DSLLLQAPVS PALSPGAQHA VGATSLYGVT QLSSTTPSLP  180
GVYPSLSSPT GVIQKEQAFP ERPGEPECQY YLKTGDCKFG TSCKFHHPRD RVPPRANCIL  240
SPIGLPLRPV CSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap855832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078078.11e-165Zinc finger C-x8-C-x5-C-x3-H type family protein
RefseqNP_182306.21e-165Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ84W911e-166C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLD7MVW40.0D7MVW4_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0039_10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-149C3H family protein