PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856016
Common NameARALYDRAFT_655385
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 203aa    MW: 21262.9 Da    PI: 5.0871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856016genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-174291155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  856016 42 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYTTPEMAAAAYDVAALALKG 91
            68****9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-94291IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-1843101IPR016177DNA-binding domain
SMARTSM003807.2E-2743107IPR001471AP2/ERF domain
PROSITE profilePS5103219.6124399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2643101IPR001471AP2/ERF domain
CDDcd000183.56E-1644101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MADPKTPITE PKARSQSSSS SGNDINTLMA TDADISRRKK RPVYRGIRCR SGKWVSEIRE  60
PKKTTRVWLG TYTTPEMAAA AYDVAALALK GGDTVLNFPD SVGSYPSPLS SSAAHIRCAA  120
AAAAAARGAA AAAVKGGEKK EEEVCDTAGS STMGFVDEEE LLNMPGLLAD MAKGMMVAPP  180
WMGSPPSDDS PENSDGESLW SY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap856016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankAY5608420.0AY560842.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g63040) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865977.11e-139LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF026
RefseqXP_020871991.11e-139LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF026
SwissprotQ9CAN92e-96ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLD7MWZ21e-144D7MWZ2_ARALL; Predicted protein
STRINGAl_scaffold_0240_11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-26ERF family protein