PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

856135

Common Name

ARALYDRAFT_655509

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 142aa MW: 16283.3 Da PI: 5.7452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
856135	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.9	5.7e-16	40	114	13	96
TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +p f+++h +gk+ ++kt+ l++ s ++W vk+ ++ lt+GW++F+ +++L+ gD+vvF+++g++ f +v++ 856135 40 H---NIPVAFFSKHvEGKNDQNKTVNLRSdASEKTWLVKM--DGLN----LTDGWEDFAFSHDLRIGDIVVFRHEGEMVF--HVTA 114 4...49*******8888899**97888***..5555....*********************9998888..6655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-20	12	120	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.16E-13	13	113	No hit	No description
PROSITE profile	PS50863	11.66	25	118	IPR003340	B3 DNA binding domain
SMART	SM01019	4.7E-17	29	118	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-17	30	124	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.8E-10	39	110	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MADQSLLHSP IKPHFFKPLL EGFRTHLVLC STLFSYISEH NIPVAFFSKH VEGKNDQNKT 60 VNLRSDASEK TWLVKMDGLN LTDGWEDFAF SHDLRIGDIV VFRHEGEMVF HVTALGPSCC 120 EIQYYTSSHN INDDDRNDQT NI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	856135

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006535	1e-108	AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBank	BT002947	1e-108	BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds.
GenBank	CP002684	1e-108	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875226.1	1e-90	B3 domain-containing protein REM17, partial
Swissprot	Q84WP3	2e-72	REM17_ARATH; B3 domain-containing protein REM17
TrEMBL	D7MVQ9	1e-102	D7MVQ9_ARALL; Predicted protein (Fragment)
STRING	Al_scaffold_0022_1	1e-103	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	7e-75	B3 family protein

Link Out ? help Back to Top
Phytozome	856135
Entrez Gene	9299184

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]