PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856156
Common NameARALYDRAFT_655533
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 128aa    MW: 13951.8 Da    PI: 7.19
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856156genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-175398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++e de l ++vk+ G+++W++ +r ++ gR++k+c++rw + 
           856156 53 KGSWSPEQDEALTRLVKKCGPRNWTLMSRGIP-GRSGKSCRLRWCNQ 98
                     799*****************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.60248103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2049109IPR009057Homeodomain-like
SuperFamilySSF466891.93E-1649109IPR009057Homeodomain-like
SMARTSM007175.3E-1452101IPR001005SANT/Myb domain
PfamPF002491.4E-155398IPR001005SANT/Myb domain
CDDcd001672.62E-145597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MNSEISQPPE LMPSLSPFSG VDISEDTINA AVEAELAELA KSDSNGGGKS KVKGSWSPEQ  60
DEALTRLVKK CGPRNWTLMS RGIPGRSGKS CRLRWCNQLD PNLKRKPFSG SLLSYLIHMN  120
FSVEEDL*
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap856156
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030008e-88AC003000.3 Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence.
GenBankAF0021098e-88AF002109.3 Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence.
GenBankCP0026858e-88CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881682.11e-71transcription factor MYB25 isoform X1
RefseqXP_020885123.11e-74transcription factor MYB25, partial
RefseqXP_020885846.18e-72transcription factor MYB25 isoform X2
SwissprotO041923e-52MYB25_ARATH; Transcription factor MYB25
TrEMBLD7MXU91e-87D7MXU9_ARALL; Predicted protein
STRINGAl_scaffold_0612_12e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2315744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-34myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]