PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

856290

Common Name

ARALYDRAFT_655672

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HB-other

Protein Properties

Length: 127aa MW: 14044 Da PI: 6.3451

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
856290	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.5e-20	68	123	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++++ q++eLe++F+++++p+ ++r L+ +lgL+ qVk+WFqN+R++ k 856290 68 KKRYHRHSQIQIQELESFFRECPHPDDNQRNALSVQLGLDPVQVKFWFQNKRTQSK 123 688899***********************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.35E-19	50	124	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-21	51	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.37	65	125	IPR001356	Homeobox domain
SMART	SM00389	4.0E-12	66	125	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-17	68	123	IPR001356	Homeobox domain
CDD	cd00086	2.72E-16	68	123	No hit	No description
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MSQSNMVPVV NNGDGDNNEN NNVSNNNGGA DNTNAGNHSG DQELESGNTS SGNHGEGLRN 60 NQAPPPKKKR YHRHSQIQIQ ELESFFRECP HPDDNQRNAL SVQLGLDPVQ VKFWFQNKRT 120 QSKAYE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	856290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF988635	1e-113	EF988635.1 Arabidopsis thaliana homeodomain-leucine zipper protein (HDG3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885309.1	3e-80	homeobox-leucine zipper protein HDG3 isoform X2
Swissprot	Q9ZV65	5e-45	HDG3_ARATH; Homeobox-leucine zipper protein HDG3
TrEMBL	D7MWH2	1e-87	D7MWH2_ARALL; Predicted protein
STRING	Al_scaffold_0125_1	2e-88	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32370.1	1e-43	homeodomain GLABROUS 3

Link Out ? help Back to Top
Phytozome	856290
Entrez Gene	9298929

Publications ? help Back to Top
Burkart-Waco D,Ngo K,Lieberman M,Comai L Perturbation of parentally biased gene expression during interspecific hybridization. PLoS ONE, 2015. 10(2): p. e0117293 [PMID:25719202]