PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856734
Common NameARALYDRAFT_656178
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 226aa    MW: 24667.4 Da    PI: 10.7792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856734genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-1463109354
             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
             ++h+ +ErrRR riNs f++Lr++lP++      K +Ka++L ++v+Y ++L
  856734  63 KKHSDAERRRRLRINSQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 109
             68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1351115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-1163114No hitNo description
PfamPF000106.5E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-1464114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVSLHHLEQG MRPISRCYNP TVYSTTIGGN FLAGAATSSK LFSRGFSVTK PKSKSESKEV  60
AAKKHSDAER RRRLRINSQF ATLRTILPNL VKQDKASVLG ETVRYFNELK KMVQDIPTTP  120
SLEDSMRLGH CNNNRDLARV VFSCSDRDGL MSEVAESMKA VKAKAVRAEI MTVGGRTKCA  180
LFVHGVNGNE GLVKLKKSLK PVVNGKSSSE AKNNNIGGSL LTQQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMap856734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874989.11e-154LOW QUALITY PROTEIN: transcription factor bHLH131
SwissprotP0CB251e-141BH131_ARATH; Transcription factor bHLH131
TrEMBLD7M9K51e-165D7M9K5_ARALL; Predicted protein
STRINGAl_scaffold_0007_2331e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-117bHLH family protein