PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

85851

Common Name

MADS11-2, SELMODRAFT_451047

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

M-type_MADS

Protein Properties

Length: 60aa MW: 6819.04 Da PI: 8.899

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
85851	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40	5.2e-13	14	45	6	37
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevav 37 ksnr+ tf kR g++KKA E+ +LC+ae + 85851 14 KSNRNATFRKRSCGLMKKADEIHILCGAELML 45 89**************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.23E-16	1	59	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-13	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.6	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.11E-13	2	60	No hit	No description
PRINTS	PR00404	3.0E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-12	14	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MGRCKIEIKY LTVKSNRNAT FRKRSCGLMK KADEIHILCG AELMLEMEPE GGTPRIYASE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002978231.1	1e-37	developmental protein SEPALLATA 3
TrEMBL	D8S478	2e-36	D8S478_SELML; Type I MADS-domain transcription factor
STRING	EFJ20888	4e-37	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	2e-11	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	85851
Entrez Gene	9658163

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]