PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 859202
Common NameARALYDRAFT_658646
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 179aa    MW: 21100.8 Da    PI: 4.735
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
859202genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind591.3e-181299197
                  HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind  1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97
                  +F++ +y +++d +  ++isws++g+sf+++++eef++++L+++Fk++++  F   L++  F+k+++++         w F++++F +++ +l+++i
        859202 12 SFITTTYVMVDDLSSYSIISWSQSGKSFIIWNPEEFSSNLLQRFFKTNSLDLFFFNLEIHCFRKIDSRK---------WDFANDNFVRDQPHLINNI 99
                  59***************************************************************9988.........****************998 PP
2HSF_DNA-bind285.6e-09146177132
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES- CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvld 32 
                   +Fl+k ye+++d++ ++++sws++g+sf++++
        859202 146 SFLTKAYEMVDDPSSDKIVSWSQSGKSFIIWN 177
                   59*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-23696IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-259102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-201099IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-61336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-191399IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-65163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-66476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-9138178IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-7144178IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-5147177IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNEKGDSSTS LSFITTTYVM VDDLSSYSII SWSQSGKSFI IWNPEEFSSN LLQRFFKTNS  60
LDLFFFNLEI HCFRKIDSRK WDFANDNFVR DQPHLINNII SFMIEERDQL DRKMDMIKAE  120
RLFTMQVKEV EDQLQPNRCY PNEQHSFLTK AYEMVDDPSS DKIVSWSQSG KSFIIWNP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap859202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870020.12e-76heat stress transcription factor C-1
SwissprotO494035e-24HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLD7MAE61e-128D7MAE6_ARALL; Predicted protein
STRINGAl_scaffold_0007_27011e-128(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2017156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.14e-64HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]