PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

859515

Common Name

ARALYDRAFT_658959

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 244aa MW: 27883.1 Da PI: 10.151

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
859515	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	102.5	3.6e-32	69	158	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +rlw+eeDei+ + +idfka+tg+sp+dd+++f++++kksisf+vsksq+ +Kir LKkK+ +k+kk +s++++hd+k+++l k+iWgs 859515 69 LHRLWTEEDEISDRRNMIDFKAETGTSPHDDLNKFFDIAKKSISFDVSKSQFGDKIRGLKKKYFGKRKK------KSVESDHDKKCLGLVKSIWGS 158 68*****************************************************************......8999*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-24	70	157	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
NPKISFRRCP TSDSDSDKPI VFTKQMRMEG TDSPAVKSGK KRASEGTTSK DIKRAKKVSG 60 DNDNKKPHLH RLWTEEDEIS DRRNMIDFKA ETGTSPHDDL NKFFDIAKKS ISFDVSKSQF 120 GDKIRGLKKK YFGKRKKKSV ESDHDKKCLG LVKSIWGSED KEVVILGGDS EWSNWFEKSF 180 LVRVIVSLGM DECFVKWKWS KVPVEIKKKI EEKMKMVEGK EFQLLSLKID VLKEVTSLIA 240 ETN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	859515

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875636.1	1e-121	probable transcription factor At1g44810
Swissprot	Q9LPF0	1e-115	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	D7MHG1	1e-173	D7MHG1_ARALL; Predicted protein (Fragment)
STRING	Al_scaffold_0007_3014	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	2e-95	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	859515
Entrez Gene	9306451

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]