PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 859602
Common NameARALYDRAFT_659046
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 86aa    MW: 10090 Da    PI: 10.1675
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
859602genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14e-171053245
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
            r e+   r+  +skR++g++KKAeE+  LCd e+ +i++s+t+k
  859602 10 RLESLKERSSKYSKRKKGLFKKAEEVAMLCDCEIILIVVSPTDK 53
            5678889999*******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.815161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-22279IPR002100Transcription factor, MADS-box
CDDcd002661.13E-19284No hitNo description
PRINTSPR004046.6E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-161255IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGRKKIKLNR LESLKERSSK YSKRKKGLFK KAEEVAMLCD CEIILIVVSP TDKPTIFHTR  60
SKSFSKIYER YCMLSLQERE ERCDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap859602
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870417.25e-52agamous-like MADS-box protein AGL66
TrEMBLD7MHP61e-53D7MHP6_ARALL; Predicted protein
STRINGAl_scaffold_0007_31012e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.11e-35AGAMOUS-like 33