PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 859673
Common NameARALYDRAFT_659117
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SAP
Protein Properties Length: 450aa    MW: 49740.9 Da    PI: 6.6968
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
859673genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP7562.8e-23014481454
     SAP   1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWr 102
             ms+ssss  s+++++++gg     s+g +e+ps sr+r  an+vwpePfle+la+qva++as+s+G la+a+alanvf+vc+tw+avsrsd+lwq l+r++W+
  859673   1 MSTSSSS--SNNGDSDAGG-----SGGVFEAPSPSRPRrGANDVWPEPFLESLAVQVAVNASSSSGLLASAPALANVFRVCTTWQAVSRSDHLWQLLSRQVWA 96 
             6776664..4455555443.....44789*****9998799************************************************************** PP

     SAP 103 rtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGiv 205
             rt+l++dtWr+e+iyrhrtarnfrtr+++y+tlqfdp+dvde   +d+lsCrcl+lsd ylaaGfadG+vrlf l++rlhv+t++p  rdr+GrfsravsGi+
  859673  97 RTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDE---PDSLSCRCLTLSDLYLAAGFADGTVRLFLLNSRLHVRTLRPPLRDRFGRFSRAVSGIF 196
             **************************************9998...689******************************************************* PP

     SAP 206 isdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrv 308
             isdsrl+fat+dGdihva+idg  ++++r+a++Gd+vndGalvdf+G+grWwvGl+aGvpGrafhiWd+++ee++fvGGsltdPeavmGWh+ltelt+++Gr+
  859673 197 ISDSRLTFATMDGDIHVAEIDG--VGHTRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPGRAFHIWDCNSEETTFVGGSLTDPEAVMGWHTLTELTTSLGRL 297
             **********************..66***************************************************************************** PP

     SAP 309 rvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvW 409
             r++++etavaCt++r++v+dlrnqgv+++e+ee+ rGliv+++da++eay+++dsrG+a+vrrv++l++vc+frv+g aqr+v+gCvn+ +al++agg++rvW
  859673 298 RISGNETAVACTRWRIMVIDLRNQGVIIGEDEEQrRGLIVTGFDANDEAYLRMDSRGNARVRRVNTLQTVCEFRVSGaAQRRVMGCVNRLHALMCAGGIMRVW 400
             ****************************99888779*****************************************9************************* PP

     SAP 410 eiekkegylyslrervgevnalvaddrhvavsss....dgtihlldfga 454
             e+e+ e ylys+rervgev+a+vaddrhvav+ss    +++ihl+dfga
  859673 401 EVERGE-YLYSIRERVGEVDAIVADDRHVAVASSsstaQSIIHLWDFGA 448
             ****77.************************9986777899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.05E-663117IPR001810F-box domain
Gene3DG3DSA:1.20.1280.507.6E-665132No hitNo description
SuperFamilySSF509783.2E-11141319IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.108.3E-8144164IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.120.10.308.3E-4165284IPR011042Six-bladed beta-propeller, TolB-like
Gene3DG3DSA:2.130.10.108.3E-8300446IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.2E-11363445IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSTSSSSSNN GDSDAGGSGG VFEAPSPSRP RRGANDVWPE PFLESLAVQV AVNASSSSGL  60
LASAPALANV FRVCTTWQAV SRSDHLWQLL SRQVWARTHL MHDTWRDEFI YRHRTARNFR  120
TRTHTYFTLQ FDPSDVDEPD SLSCRCLTLS DLYLAAGFAD GTVRLFLLNS RLHVRTLRPP  180
LRDRFGRFSR AVSGIFISDS RLTFATMDGD IHVAEIDGVG HTRTAYAGDI VNDGALVDFT  240
GCGRWWVGLF AGVPGRAFHI WDCNSEETTF VGGSLTDPEA VMGWHTLTEL TTSLGRLRIS  300
GNETAVACTR WRIMVIDLRN QGVIIGEDEE QRRGLIVTGF DANDEAYLRM DSRGNARVRR  360
VNTLQTVCEF RVSGAAQRRV MGCVNRLHAL MCAGGIMRVW EVERGEYLYS IRERVGEVDA  420
IVADDRHVAV ASSSSTAQSI IHLWDFGAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMap859673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2231250.0AJ223125.1 Arabidopsis thaliana mRNA for sterile apetala.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870448.10.0transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLD7MHW00.0D7MHW0_ARALL; Predicted protein
STRINGAl_scaffold_0007_31720.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]