PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

860034

Common Name

ARALYDRAFT_659478

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 327aa MW: 37737.7 Da PI: 8.9879

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
860034	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	75	1.4e-23	123	205	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ ws+eDei++L G++d++++ +s+ + dafy+++++ +++++sk+ql++K+++LKk+f++++++ + +++f+lsk+iW 860034 123 KMTWSKEDEISILSGILDYQEESQSSYNQKYDAFYDYMREYMESDFSKKQLMDKVKKLKKRFRENQAR-----------SRREEVFKLSKIIWA 205 789****************************************************************9...........334567888888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-18	123	204	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
KLSYFGRILQ YQETGVIIFE VNKIDIETPR AGPMKSGPHF CSGDRHRDTQ SNTKKLKLSQ 60 TPFSFCTTQT RNIALKSDPE SRPMLSSPLK RKHDDDYEIS GLRRRKLPKT RGTFVPSSSA 120 SLKMTWSKED EISILSGILD YQEESQSSYN QKYDAFYDYM REYMESDFSK KQLMDKVKKL 180 KKRFRENQAR SRREEVFKLS KIIWAKKETE HAYEENKDQT KEDVPCAERE RASNANTEIN 240 NGEKKKIEED GVDDLCVLLG ALEASTSFQS LNENLQKFLL QNMKNVGANQ RKELTDEWKT 300 LLAEDMELDV KKLTFSAKLV NVGFSA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	105	KRKHDDDYEISGLRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	860034

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SJM4	2e-29	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	D7MIY5	0.0	D7MIY5_ARALL; Predicted protein (Fragment)
STRING	Al_scaffold_0007_3533	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-22	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	860034
Entrez Gene	9304684

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]