PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

860036

Common Name

ARALYDRAFT_659480

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 256aa MW: 29227 Da PI: 8.2804

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
860036	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	87.6	1.5e-27	60	153	5	98
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 + w+++ e+++L Gl+d++++t+ s+++d++a+y+ +++s+ +++sk+ql +Ki +LK +f ++ +k+ gk sf++++d+++f+lsk+iWg+ 860036 60 KNWTKTEELLILEGLVDYQNETKLSYTSDWNAVYDRIRDSMGSDFSKKQLANKILKLKLRFGDNLAKSIAGKRLSFTNTDDEQVFKLSKIIWGK 153 67******************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.1E-24	60	152	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MKRQLQGSDS SDYSNSDCFK IRYTRKHEDD DISGSEAMLR SRKKLTTTTL LEPSSSGPCK 60 NWTKTEELLI LEGLVDYQNE TKLSYTSDWN AVYDRIRDSM GSDFSKKQLA NKILKLKLRF 120 GDNLAKSIAG KRLSFTNTDD EQVFKLSKII WGKNITTNSA SNEIMDQTKE RVSDDGEKEK 180 CEDLNVLQEA LEVAASFLRL GNYQQKWLLR NLKNLGATQR KELTDEWNAL VAEDMQLCIK 240 KQSFYAKLVK EGFSV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	860036

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002868614.1	0.0	GLABROUS1 enhancer-binding protein-like 3
Swissprot	Q9SJM4	5e-33	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	D7MIY7	0.0	D7MIY7_ARALL; Predicted protein
STRING	Al_scaffold_0007_3535	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	4e-33	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	860036
Entrez Gene	9304686

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]